Arabidopsis subcellular database

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August undefined, 2024

WebAll subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database (Hooper et al., 2024). Additional protein function data is from MapMan (Usadel et al., … WebLiquid-cultured cells are gently spun down and resuspended in their growth media supplemented with sucrose. After the cells are concentrated again by gentle …

Arabidopsis Interactions Viewer (AIV) 2.0 - University of Toronto

WebReconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-speciﬁcity Shira Mintz-Oron a, Sagit Meir , Sergey Malitsky , Eytan Ruppinb,c, Asaph Aharonia,1, and Tomer Shlomid,1 aDepartment of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel; bSchool of Computer … Web5 ago 2011 · For Arabidopsis ( Arabidopsis thaliana ), there are currently three databases available from which information on isoprenoid pathway genes can be obtained: … galfa gmbh co kg finsterwalde

IJMS Free Full-Text Systematical Characterization of the AT …

Web13 nov 2024 · Omics research in Oryza sativa (rice) relies on the use of multiple databases to obtain different types of information to define gene function. We present Rice DB, an Oryza information portal that is a functional genomics database, linking gene loci to comprehensive annotations, expression data and … Web28 nov 2016 · ASURE––Arabidopsis SUbcellular REference, CoEx––coexpression, FP––fluorescent protein, MS––mass spectrometry, PPI––protein–protein interaction. SUBA4 query platform overview. SUBA5 provides a central resource for exploring Arabidopsis protein subcellular location data. Proteins have specific functions and locations within the plant cell. They generate or are themselves products important for plant growth and response. Protein subcellular location and the proximity relationship of proteins are important clues to ... galfab houston tx

DBSubLoc: database of protein subcellular localization

SUBA4: the interactive data analysis centre for Arabidopsis …

http://www.paper.edu.cn/scholar/showpdf/NUT2UN2INTD0ExeQh Web18 gen 2024 · We tested the deep learning system across two datasets, the SUBcellular location database for Arabidopsis proteins (SUBA) 13 and another dataset that includes Crop Proteins with Annotated ... blackboxmycar richmondWebSystematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins Cells are organized … galey\u0027s farm victoria bc

"Web10 apr 2024 · Members of the histone deacetylase RPD3/HDA1 family play an important role in regulating plant development and stress tolerance. This study aimed to identify RPD3/HDA1 members in sugar beet using HMMsearch. The physicochemical properties, genetic evolution, subcellular localization, and expression pattern in response to … " - Arabidopsis subcellular database

Arabidopsis subcellular database

Arabidopsis Interactions Viewer (AIV) 2.0 - University of Toronto

WebThe subcellular localization of long noncoding RNAs (lncRNAs) holds valuable clues to their molecular function. However, measuring localization of newly discovered lncRNAs involves time-consuming and costly experimental methods. We have created "lncATLAS," a comprehensive resource of lncRNA localiza … WebCells are organized into a complex network of subcellular compartments that are specialized for various biological functions. Subcellular location is an important attribute of protein function. To facilitate systematic elucidation of protein subcellular location, we analyzed experimentally verified …

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Web19 set 2024 · Thirty seedlings from three 35S:GbTCP4 transgenic Arabidopsis lines and WT Arabidopsis were planted in nutrient soil and used for phloroglucinol staining after 6 weeks of growth. Fresh stems of Arabidopsis were taken, and a 1 cm thick sample of the same part of the transgenic and WT stems was cut with a blade. Web3 gen 2007 · We have undertaken to bring these various data sources together to build SUBA, a SUBcellular location database for Arabidopsis proteins. The localisation data in SUBA encompasses 10 distinct ...

Web3 gen 2007 · The localisation data in SUBA encompasses 10 distinct subcellular locations, >6743 non-redundant proteins and represents the proteins encoded in the transcripts … Web15 dic 2024 · The success rate with the peptide antibodies was very low. We show that affinity purification of antibodies massively improved the detection rate. Of 70 protein antibodies, 38 (55%) antibodies ...

WebePlant. ePlant helps biologists visualize the natural connections between DNA sequences, natural variation (polymorphisms), molecular structures, protein-protein interactions, and gene expression patterns by combining several data visualization tools with a zoomable user interface Waese et al. 2024. WebThe DBSubLoc database has been built on annotations from primary protein sequence databases: Swiss-Prot/TrEMBL (10) and the Protein Information Resource (PIR) (11). Annotations were also provided by model organism genome projects such as the SGD (Saccharomyces cerevisiae) (12), TAIR (Arabidopsis thaliana) (13), FlyBase …

Web7 apr 2024 · The genomes of two other plant species (Arabidopsis thaliana L., rice (Oryza sativa L.)) were also obtained from the Phytozome v12 database. To identify all SUT protein- coding genes in the sugar beet genome, the protein sequence of the Arabidopsis SUT gene and the protein sequence of the rice SUT gene were downloaded from the …

Web29 dic 2024 · Abstract. Subcellular mRNA quantities and spatial distributions are fundamental for driving gene regulatory programmes. Single molecule RNA fluorescence in situ hybridization (smFISH) uses fluorescent probes to label individual mRNA molecules, thereby facilitating both localization and quantitative studies. Validated reference mRNAs … blackbox my car richmondWebA variety of experimental methods are currently being used to produce localisation data that need to be made accessible in an integrated manner. Chimeric fluorescent fusion … black box nambourWebArabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected information from the literature. It contains data relevant to protein-protein interaction, protein subcellular location, ortholog maps, domain attributes and gene regulation. galfab inc winamac inWeb4 gen 2024 · The SUBcellular location database for Arabidopsis proteins (SUBA4, http://suba.live) is a comprehensive collection of manually curated published data sets of … blackboxmycar thinkware cpl filter canadaWebThe aim of AraCyc is to represent Arabidopsis metabolism as completely as possible with a user-friendly Web-based interface. ... 170 pathways that include information on compounds, intermediates, cofactors, reactions, genes, proteins, and protein subcellular locations. The database uses Pathway Tools software, ... galey\u0027s table rock lake vacation rentalWeb12 ago 2014 · Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family Sandra K. Tanz 1* , Ian Castleden 2 , Cornelia M. Hooper 2 , Ian Small 1,2 and A. Harvey Millar 1,2,3 1 The Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia black box natureWeb4 gen 2024 · The SUBcellular location database for Arabidopsis proteins (SUBA4, http://suba.live) is a comprehensive collection of manually curated published data sets of … black box nail polish review